News
2024
October 7, 2024
Yuqi’s research article “Alternative splicing perspective to prey preference of environmentally friendly biological agent Cryptolaemus montrouzieri” is accepted for publication in BMC Genomics.
May 7, 2024
Chunyu and Yuqi’s research article “Alternative splicing plays a nonredundant role in greater amberjack (Seriola dumerili) in acclimation to ambient salinity fluctuations” is accepted for publication in Marine Environmental Research.
January 29, 2024
The research article “A Universal Therapeutic STING Mimic Boosts Antitumor Immunity via Preferential Activation of IRF3/IFN-I Axis” I co-authored is accepted for publication in Nature Nanotechnology.
January 18, 2024
The research article “Single-cell chromatin profiling reveals genetic programs activating pro-regenerative states in non-myocyte cells” I co-first-authored is accepted for publication in Science Advances.
2023
December 20, 2023
The research article “Epigenetic regulation of cardiac maturation by arginine methyltransferase CARM1” I co-corresponding-authored is accepted for publication in Circulation.
October 24, 2023
The research article “Comparative chloroplast genome analyses provide new insights into phylogeny of Taraxacum and molecular markers for distinguishing rubber producing dandelions from their weedy relatives” I co-corresponding-authored is accepted for publication in Industrial Crops & Products.
October 12, 2023
The research article “Comparative chloroplast genome analyses provide insights into evolutionary history of Rhizophoraceae mangroves” I co-first-authored is accepted for publication in PeerJ.
October 10, 2023
The research article “Redox-active endosomes mediate a5b1 integrin signaling and promote chondrocyte matrix metalloproteinase production in osteoarthritis” I co-authored is accepted for publication in Science Signaling.
September 26, 2023
Xinhui’s research article “Unravelling Chilling-stress Resistance Mechanisms in Endangered Mangrove Plant Lumnitzera littorea (Jack) Voigt” is accepted for publication in Marine Environmental Research. Congratulations!
September 16, 2023
The research article “Single-cell transcriptomic analysis of dental pulp and periodontal ligament stem cells” I co-first-authored is accepted for publication in Journal of Dental Research.
September 12, 2023
Xinhui’s research article “Somatic Embryogenesis and Plant Regeneration from Stem Explants of Pomegranate” is accepted for publication in Horticulturae. Congratulations!
September 6, 2023
The research article “Translational landscape of direct cardiac reprogramming reveals a role of Ybx1 in repressing cardiac fate acquisition” I co-first-authored is accepted for publication in Nature Cardiovascular Research.
June 20, 2023
Yuqi’s research article “Divergent MolecularResponses of Greater Amberjack (Seriola dumerili) to Acute Salinity Stress Revealed by Comparative Transcriptome Analysis” is accepted for publication in Frontiers in Marine Science. Congratulations!
May 5, 2023
Yuqi’s research article “Unraveling molecular mechanisms underlying low-temperature adaptation in Laguncularia racemosa” is accepted for publication in Plant Physiology and Biochemistry. Congratulations!
April 17, 2023
Xinhui’s research article “Genome-wide alternative polyadenylation dynamics underlying plant growth retardant-induced dwarfing of pomegranate” is accepted for publication in Frontiers in Plant Science. Congratulations!
April 17, 2023
Welcome Chunyu to join the group as a Research Assistant!
2022
September 28, 2022
Welcome Xinhui to join the group! Xinhui will officially be our group member in the next September.
August 31, 2022
Warm welcome Shan, Xiaohui and Minhong to join our group!
August 10, 2022
Welcome Panpan, Yutong and Chunxi to join the group!
May 25, 2022
The review article “A comprehensive comparison on cell type composition inference for spatial transcriptomics data” I co-authored is accepted for publication in Briefings in Bioinformatics.
March 31, 2022
The review article “A systematic evaluation of Hi-C data enhancement methods for enhancing PLAC-seq and HiChIP data” I co-first-authored is accepted for publication in Briefings in Bioinformatics.
February 14, 2022
Wenxu’s research article “Molecular dissection unveiling dwarfing effects of plant growth retardants on pomegranate” is accepted for publication in Frontiers in Plant Science. Congratulations!
January 10, 2022
The research article “Genomic insight into the scale specialization of the biological control agent Novius pumilus (Weise, 1892)” I co-authored is accepted for publication in BMC Genomics.
January 9, 2022
Wenxu’s poster was selected as one of winner for the Best Poster Award of 2021 Ecological Forum of SYSU. Congratulations!
2021
December 21, 2021
The research article “Single Cell Analysis Unveils the Role of the Tumor Immune Microenvironment and Notch Signaling in Dormant Minimal Residual Disease” I co-first-authored is accepted for publication in Cancer Research.
December 9, 2021
The research article “Where whole-genome duplication is most beneficial: Adaptation of mangroves to a wide salinity range between land and sea” I co-authored is accepted for publication in Molecular Ecology.
December 7, 2021
The research article “Super interactive promoters provide insight into cell type-specific regulatory networks in blood lineage cell types” I co-authored is accepted for publication in PLoS Genetics.
October 31, 2021
The research article “eSCAN: Scan Regulatory Regions for Aggregate Association Testing using Whole Genome Sequencing Data” I co-coresponding-authored is accepted for publication in Briefings in Bioinformatics.
September 11, 2021
The research article “HPRep: quantifying reproducibility in HiChIP and PLAC-seq datasets” I co-authored is accepted for publication in Current Issues in Molecular Biology.
September 4, 2021
The research article “Delineating Chromatin Accessibility Re-patterning at Single Cell Level during Early Stage of Direct Cardiac Reprogramming” I co-first-authored is accepted for publication in Journal of Molecular and Cellular Cardiology.
August 17, 2021
The research article “ExpressHeart: Web Portal to Visualize Transcriptome Profiles of Non-cardiomyocyte Cells” I co-corresponding-authored is accepted for publication in International Journal of Molecular Sciences.
August 13, 2021
The research article “Coordinated transcriptome and cell state dynamics of non-myocytes in heart regeneration” I co-first-authored is accepted for publication in EMBO reports.
June 17, 2021
The research article “SnapHiC: a computational pipeline to identify chromatin loops from single cell Hi-C data” I co-authored is accepted for publication in Nature Methods.
June 15, 2021
The research article “Dimensionality reduction by UMAP reinforces sample heterogeneity analysis in bulk transcriptomic data” I co-authored is accepted for publication in principle in Cell Reports.
May 11, 2021
The research article “MUNIn—multiple-sample-unifying long-range chromatin Interaction detector: a statistical framework for identifying long-range chromatin interactions from multiple samples” I co-corresponding-authored is accepted for publication in Human Genetics and Genomics.
April 9, 2021
The research article “Development of Next-generation Tumor-homing Induced Neural Stem Cells to Enhance Treatment of Metastatic Cancers” I co-authored is accepted for publication in Science Advances.
April 5, 2021
The research article “Single cell dual-omics reveals the transcriptomic and epigenomic diversity of cardiac non-myocytes” I co-first-authored is accepted for publication in Cardiovascular Research.
March 22, 2021
The research article “Super-hotspots and -coldspots in the repair of UV-induced DNA damage in the human genome” I co-authored is accepted for publication in Journal of Biological Chemistry.
March 15, 2021
The research article “iSMNN: Batch Effect Correction for Single-cell RNA-seq data via Iterative Supervised Mutual Nearest Neighbor Refinement” I first authored is
accepted for publication in Briefings in Bioinformatics.
February 22, 2021
The research article “Mucosal Associated Invariant T (MAIT) Cell Responses Differ by Sex in COVID-19” I co-authored is accepted for publication in Med.
January 15, 2021
The review article “Direct cell reprogramming: approaches, mechanisms and progress” I co-authored is accepted for publication in Nature Reviews Molecular Cell Biology.
January 5, 2021
The research article “HiC-ACT: Improved Chromatin Interactions from Hi-C Data via Aggregated Cauchy Test” I co-corresponding-authored is accepted in principle for publication in American Journal of Human Genetics.
2020
December 20, 2020
The research article “FIREcaller: Detecting Frequently Interacting Regions from Hi-C Data” I co-corresponding-authored is accepted for publication in Computational and Structural Biotechnology Journal.
October 26, 2020
The research article “Assessment of Familial Risk in Patients with Hidradenitis Suppurativa” I co-authored is provisionally accepted for publication in British Journal of Dermatology.
October 20, 2020
The research article “Unravelling the molecular mechanisms of Abscisic acid-mediated drought-stress alleviation in pomegranate (Punica granatum L.)” I co-corresponding-authored is accepted for publication in Plant Physiology and Biochemistry.
September 16, 2020
The research article “Downregulation of Beclin1 promotes direct cardiac reprogramming” I co-authored is
accepted for publication in Science Translational Medicine.
May 1, 2020
The research article “SMNN: Batch Effect Correction for Single-cell RNA-seq data via Supervised Mutual Nearest Neighbor Detection” I co-first authored is
accepted for publication in Briefings in Bioinformatics.
I offically become an Research Assistant Professor in Department of Pathology and Laboratory Medicine and McAllister Heart Institute, University of North Carolina, Chapel Hill.